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  5. Lfl_g22108

Lfl_g22108


Description : subgroup ERF-I transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g22108
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00185480 ERF-1, ATERF-1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00058p00066390 RAP2.11,... External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
AMTR_s00069p00132820 RAP2.11,... External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
AT1G74930 ORA47 Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G75490 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G78080 RAP2.4 related to AP2 4 0.03 OrthoFinder output from all 47 species
AT2G31230 ATERF15, ERF15 ethylene-responsive element binding factor 15 0.03 OrthoFinder output from all 47 species
AT3G57600 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G06746 RAP2.9, DEAR5 related to AP2 9 0.07 OrthoFinder output from all 47 species
AT4G17490 ERF-6-6, ERF6, ATERF6 ethylene responsive element binding factor 6 0.04 OrthoFinder output from all 47 species
AT5G21960 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g07170 AtERF48, DREB2C subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g25693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07122 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Als_g61303 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aob_g26620 CRF3 subgroup ERF-VI transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g31883 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Aob_g32568 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene00525.t1 Aspi01Gene00525 subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03223.t1 DEAR2, Aspi01Gene03223 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05319.t1 DREB2A, DREB2,... subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene05658.t1 Aspi01Gene05658 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene05659.t1 Aspi01Gene05659 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene27034.t1 TINY2, Aspi01Gene27034 subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene34446.t1 Aspi01Gene34446 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35032.t1 Rap2.6L, Aspi01Gene35032 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43376.t1 DREB26, Aspi01Gene43376 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene43377.t1 DREB26, Aspi01Gene43377 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47288.t1 Aspi01Gene47288 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene51266.t1 Aspi01Gene51266 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene58616.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene61391.t1 DEAR3, Aspi01Gene61391 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013243 No alias subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038131 ERF72, EBP, ATEBP, RAP2.3 not classified & original description: CDS=189-1505 0.06 OrthoFinder output from all 47 species
Azfi_s0154.g053565 RAP2.6 subgroup ERF-X transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0233.g059392 DEAR3 not classified & original description: CDS=1-1401 0.02 OrthoFinder output from all 47 species
Cba_g13066 No alias subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.224 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01002262001 RAP2.4 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
GSVIVT01013903001 No alias Ethylene-responsive transcription factor 2 OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Gb_03783 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Gb_23321 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Gb_41020 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Gb_41836 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os07g22730.1 ERF1, ATERF1,... no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os08g35240.1 LOC_Os08g35240 Ethylene-responsive transcription factor ERF017... 0.03 OrthoFinder output from all 47 species
LOC_Os09g28440.1 RRTF1, LOC_Os09g28440 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os09g35010.1 CBF4, DREB1D,... Dehydration-responsive element-binding protein 1B... 0.03 OrthoFinder output from all 47 species
LOC_Os12g39330.1 RAP2.11, LOC_Os12g39330 transcription factor (ERF). transcription factor (ERN1) 0.03 OrthoFinder output from all 47 species
Len_g21808 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Len_g37062 DEAR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55869 RAP2.11 transcription factor *(ERN1) & original description: none 0.06 OrthoFinder output from all 47 species
MA_10343854g0010 ORA47 transcription factor (DREB) 0.05 OrthoFinder output from all 47 species
MA_10431706g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_108992g0010 ORA47 transcription factor (DREB) 0.05 OrthoFinder output from all 47 species
MA_23271g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_367366g0010 ORA47 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
MA_426919g0030 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
MA_47696g0010 No alias transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
MA_55226g0020 No alias Ethylene-responsive transcription factor ERF016... 0.03 OrthoFinder output from all 47 species
Mp5g06970.1 DRN-LIKE, ESR2,... transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Ore_g26705 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g33731 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08699 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c4_23930V3.1 ERF-1, ATERF-1,... ethylene responsive element binding factor 1 0.01 OrthoFinder output from all 47 species
Ppi_g00637 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Smo69413 DEAR3 Ethylene-responsive transcription factor ERF037... 0.05 OrthoFinder output from all 47 species
Solyc03g005520.1.1 ERF1, ATERF1,... transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Solyc03g093540.1.1 Solyc03g093540 transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Solyc03g093550.1.1 Solyc03g093550 transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Solyc04g078640.3.1 DEAR2, Solyc04g078640 transcription factor (DREB) 0.05 OrthoFinder output from all 47 species
Solyc08g078180.1.1 ERF2, ATERF2,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc08g078190.2.1 ERF5, ATERF-5,... transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Solyc09g089910.1.1 Solyc09g089910 transcription factor (ERF). transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Tin_g14152 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e002358_P001 ERF-6-6, ERF6,... transcription factor (ERF) 0.06 OrthoFinder output from all 47 species
Zm00001e009867_P001 RAP2.12, Zm00001e009867 transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Zm00001e015312_P001 ERF-1, ATERF-1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e015328_P001 Zm00001e015328 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e015869_P001 RAP2.4, Zm00001e015869 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e019566_P001 ATERF12, ERF12,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e023870_P001 RAP2.4, Zm00001e023870 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e024669_P001 ERF110, Zm00001e024669 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e025999_P001 Zm00001e025999 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e029878_P001 DREB1A, ATCBF3,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e041539_P001 ERF-1, ATERF-1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 248 296
No external refs found!