Aob_g05756

Description : pre-mRNA-processing protein *(LUC7) & original description: none

Gene families : OG0004423 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004423_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g05756

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020534	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12075	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g14861	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.21G019300.1	UNE6, Ceric.21G019300	pre-mRNA-processing protein *(LUC7) & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021357.16	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g32033	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g12945	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17759	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g39300.1	LOC_Os02g39300	pre-mRNA-processing protein (LUC7)	0.03	OrthoFinder output from all 47 species
Mp7g03530.1	UNE6	pre-mRNA-processing protein (LUC7)	0.03	OrthoFinder output from all 47 species
Ppi_g03747	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.05	OrthoFinder output from all 47 species
Smo151152	UNE6	No description available	0.03	OrthoFinder output from all 47 species
Solyc05g056280.2.1	Solyc05g056280	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Spa_g56622	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g04609	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e006322_P004	Zm00001e006322	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Zm00001e011667_P003	Zm00001e011667	pre-mRNA-processing protein (LUC7)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005685	U1 snRNP	IEA	Interproscan
BP	GO:0006376	mRNA splice site selection	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
CC	GO:0034457	Mpp10 complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004882	Luc7-rel	2	171
IPR004882	Luc7-rel	207	324

External Links

No external refs found!

Aob_g05756

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation