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  5. Aob_g04492

Aob_g04492


Description : not classified & original description: none


Gene families : OG0000995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000995_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04492

Target Alias Description ECC score Gene Family Method Actions
AT5G61190 No alias putative endonuclease or glycosyl hydrolase with... 0.03 OrthoFinder output from all 47 species
Adi_g060136 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08983 EDA32 endoribonuclease *(MNU) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39952 EDA32 endoribonuclease *(MNU) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06423 EDA32 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04902 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13658 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene20512.t1 Aspi01Gene20512 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0141.g051318 No alias not classified & original description: CDS=9-1061 0.05 OrthoFinder output from all 47 species
Cba_g24669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G047500.1 Ceric.34G047500 not classified & original description: pacid=50624040... 0.04 OrthoFinder output from all 47 species
Dac_g15034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026616001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os11g06680.2 LOC_Os11g06680 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g06560.1 LOC_Os12g06560 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11787 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06703 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_24887g0010 EDA32 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g10988 EDA32 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo419584 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g17853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025605 OST-HTH/LOTUS_dom 681 748
IPR025677 OST-HTH-assoc_dom 579 631
IPR021139 NYN_MARF1 10 132
No external refs found!