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  5. Aob_g02025

Aob_g02025


Description : not classified & original description: none


Gene families : OG0000510 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g02025
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00182670 evm_27.TU.AmTr_v1... F-box protein At1g67340 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g022274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054757 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g48048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13533.t1 Aspi01Gene13533 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20353.t1 Aspi01Gene20353 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30003.t1 Aspi01Gene30003 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16241 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.28G046200.1 Ceric.28G046200 not classified & original description: pacid=50570096... 0.03 OrthoFinder output from all 47 species
Dac_g12546 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010486001 No alias F-box protein At1g67340 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os02g30300.1 LOC_Os02g30300 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g31610.1 LOC_Os04g31610 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g08620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_6399g0010 No alias F-box protein At1g67340 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g07796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33138 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03075 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06780 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g25528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001138 No alias not classified & original description: CDS=458-2101 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009923 No alias not classified & original description: CDS=105-1622 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013455 No alias not classified & original description: CDS=833-2278 0.05 OrthoFinder output from all 47 species
Spa_g51464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04573 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 46 86
IPR002893 Znf_MYND 343 384
No external refs found!