1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g01863

Aob_g01863


Description : circadian clock factor *(REVEILLE) & original description: none


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g01863

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.03 OrthoFinder output from all 47 species
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G01520 No alias Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G09600 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g081674 No alias circAdian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35636 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15171 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Aop_g13615 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31231.t1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31232.t1 LHY1, LHY,... circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000277 No alias circadian clock factor *(REVEILLE) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.04G087900.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.06G032400.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g22032 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027456001 CCA1 Multi-process regulation.circadian clock.core oscillator... 0.03 OrthoFinder output from all 47 species
GSVIVT01035231001 RVE1 RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Gb_28874 LHY1, LHY transcription factor (MYB-related). circadian clock core... 0.06 OrthoFinder output from all 47 species
Len_g19700 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21851 RVE1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g28016 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19379 RVE2, CIR1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 OrthoFinder output from all 47 species
Ore_g18757 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g13597 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11968 No alias transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013571 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014166 RVE2, CIR1 transcription factor *(REVEILLE) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g12578 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g005080.3.1 LHY1, LHY, Solyc10g005080 transcription factor (MYB-related). circadian clock core... 0.03 OrthoFinder output from all 47 species
Solyc10g084370.3.1 Solyc10g084370 transcription factor (MYB-related). REVEILLE circadian... 0.04 OrthoFinder output from all 47 species
Tin_g09976 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013333_P002 RVE2, CIR1,... transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Zm00001e021724_P005 LHY1, LHY, Zm00001e021724 transcription factor (MYB-related). circadian clock core... 0.02 OrthoFinder output from all 47 species
Zm00001e036703_P001 Zm00001e036703 transcription factor (MYB-related). REVEILLE circadian... 0.03 OrthoFinder output from all 47 species
Zm00001e040217_P001 LHY1, LHY, Zm00001e040217 circadian clock core oscillator protein (LHY|CCA1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 44 89
No external refs found!