Lfl_g18286 (AtRABA5d, RABA5d)

Aliases : AtRABA5d, RABA5d

Description : A-class RAB GTPase & original description: none

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g18286

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00189630	AtRABA1f,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
AMTR_s00068p00145200	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
AT1G16920	ATRABA1B, RAB11, RABA1b	RAB GTPase homolog A1B	0.04	OrthoFinder output from all 47 species
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.03	OrthoFinder output from all 47 species
Adi_g035517	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g081036	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g04605	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g09261	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18147	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g31350	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g00731	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g30591	RABA2b,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03446	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g20651	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22467	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g42193	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.32G031600.1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description:...	0.05	OrthoFinder output from all 47 species
Cre03.g189250	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Dac_g27746	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g40522	ATRABA2A,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g01270	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46462	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01014250001	AtRABA1f, RABA1f	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
GSVIVT01021253001	ATHSGBP, RABA1d,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
LOC_Os01g54590.1	ATRABA1B, RAB11,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os05g01480.1	ATRABA2A,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os05g20050.1	RAB-A2C,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os05g44070.1	ATRABA1B, RAB11,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
LOC_Os08g41340.1	AtRABA5d,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Len_g02212	AtRABA5d, RABA5d	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Len_g02647	RAB-A2C,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16053	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g05544	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g04633	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g39855	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g14192	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g15960	AtRABA5b, RABA5b	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g16173	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08711	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009470	ATRABA2A,...	A-class RAB GTPase & original description: CDS=131-796	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026297	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=308-952	0.03	OrthoFinder output from all 47 species
Solyc07g055290.3.1	ATRABA1A, ARA2,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc10g045550.2.1	ATRABA2A,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Spa_g07580	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g14805	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g13810	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g27440	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e031368_P002	RAB-A2C,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0001932	regulation of protein phosphorylation	IEP	HCCA
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043549	regulation of kinase activity	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0045859	regulation of protein kinase activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	12	174

External Links

No external refs found!

Lfl_g18286 (AtRABA5d, RABA5d)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation