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  5. Lfl_g18272

Lfl_g18272


Description : nMAT1/2 type-I mitochondrial RNA splicing factor & original description: none


Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g18272
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00142760 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Cba_g20844 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.04 OrthoFinder output from all 47 species
Ceric.09G034500.1 Ceric.09G034500 not classified & original description: pacid=50588493... 0.03 OrthoFinder output from all 47 species
Dcu_g03916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01601 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.04 OrthoFinder output from all 47 species
Len_g09777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35993 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.02 OrthoFinder output from all 47 species
Solyc08g077385.1.1 Solyc08g077385 nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Tin_g13211 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR024937 Domain_X 587 666
No external refs found!