Dde_g21232

Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g21232

Target	Alias	Description	ECC score	Gene Family Method
AT2G29210	No alias	splicing factor PWI domain-containing protein	0.03	OrthoFinder output from all 47 species
Adi_g019655	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g07102	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g18749	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22461	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
GSVIVT01024906001	No alias	RNA processing.RNA quality control Exon Junction complex...	0.03	OrthoFinder output from all 47 species
Lfl_g10938	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Nbi_g09941	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ppi_g42357	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Sam_g07002	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Solyc09g030390.3.1	Solyc09g030390	component SRm160 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Tin_g23972	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	85	153

External Links

No external refs found!

Dde_g21232

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation