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  5. Dde_g20972

Dde_g20972 (HY3, OOP1, PHYB)


Aliases : HY3, OOP1, PHYB

Description : temperature sensor protein *(PHY-B) & original description: none


Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g20972

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00153850 FHY2, HY8, PHYA,... External stimuli response.light.red/far red light.PHY... 0.03 OrthoFinder output from all 47 species
AT2G18790 HY3, OOP1, PHYB phytochrome B 0.04 OrthoFinder output from all 47 species
Lfl_g05031 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g05652 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g059870.4.1 HY3, OOP1, PHYB,... phytochrome photoreceptor (PHY). temperature sensor... 0.02 OrthoFinder output from all 47 species
Solyc07g045480.3.1 PHYC, Solyc07g045480 phytochrome photoreceptor (PHY) 0.03 OrthoFinder output from all 47 species
Spa_g14459 FHY2, HY8, PHYA, FRE1 phytochrome photoreceptor *(PHY) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20479 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019781 NEDD8 activating enzyme activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043743 LPPG:FO 2-phospho-L-lactate transferase activity IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045116 protein neddylation IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 914 972
IPR013767 PAS_fold 766 888
IPR013767 PAS_fold 635 750
IPR013654 PAS_2 85 202
IPR003594 HATPase_C 1022 1130
IPR013515 Phytochrome_cen-reg 430 603
IPR003018 GAF 236 417
No external refs found!