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  5. Dde_g20964

Dde_g20964


Description : large subunit beta of AP-1 trans-Golgi network cargo adaptor complex & original description: none


Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g20964

Target Alias Description ECC score Gene Family Method Actions
Aev_g02524 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.02 OrthoFinder output from all 47 species
Als_g46996 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Aob_g04482 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.02 OrthoFinder output from all 47 species
Cba_g31750 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020592.38 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 47 species
Cre05.g234665 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.01 OrthoFinder output from all 47 species
Dcu_g07725 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
GSVIVT01019391001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
LOC_Os03g23950.1 LOC_Os03g23950 large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Lfl_g02298 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Lfl_g05633 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
MA_10436050g0010 No alias Beta-adaptin-like protein C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g36319 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.02 OrthoFinder output from all 47 species
Smo269184 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Solyc08g081320.3.1 Solyc08g081320 large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Spa_g12477 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Spa_g16508 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Zm00001e001693_P001 Zm00001e001693 large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Zm00001e027916_P001 Zm00001e027916 large subunit beta of AP-4 vacuole cargo adaptor complex 0.02 OrthoFinder output from all 47 species
Zm00001e038184_P001 Zm00001e038184 large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 685 780
IPR015151 B-adaptin_app_sub_C 791 906
IPR002553 Clathrin/coatomer_adapt-like_N 15 533
No external refs found!