Dde_g03966 (GYRA)

Aliases : GYRA

Description : subunit A of DNA gyrase complex & original description: none

Gene families : OG0005091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005091_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g03966

Target	Alias	Description	ECC score	Gene Family Method
AT3G10690	GYRA	DNA GYRASE A	0.03	OrthoFinder output from all 47 species
Als_g29508	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04531	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15297.t1	GYRA, Aspi01Gene15297	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.30G043100.1	GYRA, Ceric.30G043100	subunit A of DNA gyrase complex & original description:...	0.04	OrthoFinder output from all 47 species
Cre04.g221650	GYRA	Cell cycle.organelle machineries.DNA replication.DNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01027315001	GYRA	Cell cycle.organelle machineries.DNA replication.DNA...	0.03	OrthoFinder output from all 47 species
Mp5g22710.1	GYRA	subunit A of DNA gyrase complex	0.02	OrthoFinder output from all 47 species
Msp_g13382	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g06525	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g05083	GYRA	subunit A of DNA gyrase complex & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g17994	GYRA	subunit A of DNA gyrase complex & original description: none	0.04	OrthoFinder output from all 47 species

Description

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006691	GyrA/parC_rep	934	981
IPR006691	GyrA/parC_rep	810	859
IPR006691	GyrA/parC_rep	763	804
IPR006691	GyrA/parC_rep	706	756
IPR006691	GyrA/parC_rep	875	921
IPR006691	GyrA/parC_rep	658	702
IPR002205	Topo_IIA_dom_A	182	616

External Links

No external refs found!

Dde_g03966 (GYRA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation