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  5. Dde_g01749

Dde_g01749


Description : not classified & original description: none


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g01749

Target Alias Description ECC score Gene Family Method Actions
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.03 OrthoFinder output from all 47 species
Adi_g087895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g58788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G066600.1 Ceric.33G066600 not classified & original description: pacid=50607344... 0.05 OrthoFinder output from all 47 species
Ehy_g02803 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_6371g0010 No alias Zinc finger CCCH domain-containing protein 18... 0.03 OrthoFinder output from all 47 species
Msp_g47863 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc07g047940.4.1 Solyc07g047940 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 209 229
IPR025605 OST-HTH/LOTUS_dom 261 338
IPR000504 RRM_dom 378 425
IPR018957 Znf_C3HC4_RING-type 648 686
No external refs found!