1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g69062

Aop_g69062


Description : not classified & original description: none


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g69062

Target Alias Description ECC score Gene Family Method Actions
Adi_g104494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.04 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g17720.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g10771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39622 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43027 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo182522 No alias Polyadenylate-binding protein 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Tin_g02870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0019008 molybdopterin synthase complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 787 855
IPR000504 RRM_dom 26 91
IPR000504 RRM_dom 557 617
IPR000504 RRM_dom 360 430
IPR000504 RRM_dom 681 761
No external refs found!