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  5. Aop_g62728

Aop_g62728


Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g62728

Target Alias Description ECC score Gene Family Method Actions
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Adi_g117088 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Aev_g24504 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ala_g06973 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Ala_g12918 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g09959 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G078300.1 Ceric.23G078300 nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Cre02.g086887 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g07068 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g08969 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g22620 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Gb_07065 No alias NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Gb_29033 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g06890.1 LOC_Os12g06890 NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Lfl_g06213 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
MA_10434126g0020 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ore_g26256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12223 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020546 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Solyc04g007280.3.1 Solyc04g007280 NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Spa_g06165 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Tin_g11653 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e038897_P001 NUP96, PRE,... NUP96 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 819 965
No external refs found!