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  5. Aop_g48543

Aop_g48543 (ATHM4, TRX-M4, ATM4)


Aliases : ATHM4, TRX-M4, ATM4

Description : H-type thioredoxin *(Trx-H) & original description: none


Gene families : OG0000082 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000082_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g48543
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Als_g45663 TRXH2, TRX2,... H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g24755 ATTRX1, ATTRX H1, TRX1 H-type thioredoxin *(Trx-H) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g34937 TH7, ATH7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g09310.1 TRXH2, TRX2,... H-type thioredoxin 0.05 OrthoFinder output from all 47 species
MA_167813g0010 ATCXXS1, CXXS1 H-type thioredoxin 0.03 OrthoFinder output from all 47 species
MA_7727794g0010 ATCXXS1, CXXS1 H-type thioredoxin 0.03 OrthoFinder output from all 47 species
Tin_g41255 ATTRX4, ATH4 H-type thioredoxin *(Trx-H) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e033006_P001 Zm00001e033006 H-type thioredoxin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 9 103
No external refs found!