Aop_g43549


Description : component *(uS17c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0002325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002325_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g43549
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00201470 RPS17, CS17,... Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
AT1G79850 RPS17, CS17, PRPS17 ribosomal protein S17 0.1 OrthoFinder output from all 47 species
Adi_g012725 No alias component *(uS17c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Adi_g012726 No alias component *(uS17c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g13255 No alias component *(uS17c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g47206 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aspi01Gene13972.t1 RPS17, CS17,... component *(uS17c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.11G069100.1 Ceric.11G069100 component *(uS17c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Cre02.g118950 emb1129 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g17145 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dde_g25473 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Gb_07769 RPS17, CS17, PRPS17 component psRPS17 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Msp_g12962 No alias component *(uS17c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g24135 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Nbi_g38729 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g06145 No alias component *(uS17c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pp3c11_14630V3.1 RPS17, CS17,... ribosomal protein S17 0.04 OrthoFinder output from all 47 species
Pp3c1_12860V3.1 RPS17, CS17,... ribosomal protein S17 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019876 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc03g120630.4.1 RPS17, CS17,... component psRPS17 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Spa_g48114 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Tin_g09281 RPS17, CS17, PRPS17 component *(uS17c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Zm00001e028738_P001 RPS17, CS17,... component psRPS17 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 91 158
No external refs found!