Aop_g36461 (HIS1-3)


Aliases : HIS1-3

Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g36461
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.01 OrthoFinder output from all 47 species
Adi_g029498 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g23326 HIS1-3 linker histone *(H1) & original description: none 0.15 OrthoFinder output from all 47 species
Als_g25617 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30809 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25496.t1 HIS1-3, Aspi01Gene25496 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42128.t1 HIS1-3, Aspi01Gene42128 linker histone *(H1) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G011100.1 HIS1-3, Ceric.34G011100 linker histone *(H1) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.34G044200.1 Ceric.34G044200 linker histone *(H1) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.71 HIS1-3 No description available 0.07 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.13 OrthoFinder output from all 47 species
Dcu_g00585 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.01 OrthoFinder output from all 47 species
Gb_21889 No alias linker histone (H1) 0.02 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.03 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Len_g04604 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g15112 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.08 OrthoFinder output from all 47 species
Len_g54319 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_173054g0010 HIS1-3 linker histone (H1) 0.02 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.02 OrthoFinder output from all 47 species
MA_877599g0010 No alias linker histone (H1) 0.07 OrthoFinder output from all 47 species
Msp_g09818 HIS1-3 linker histone *(H1) & original description: none 0.13 OrthoFinder output from all 47 species
Nbi_g04093 HIS1-3 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c18_14270V3.1 Pp3c18_14270 winged-helix DNA-binding transcription factor family protein 0.03 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.13 OrthoFinder output from all 47 species
Spa_g09323 HIS1-3 linker histone *(H1) & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g09324 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18792 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23953 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g01715 HIS1-3 linker histone *(H1) & original description: none 0.12 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 86 152
No external refs found!