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  5. Aop_g31519

Aop_g31519 (54CP, SRP54CP, CPSRP54, FFC)


Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none


Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g31519
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00204460 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Aev_g05995 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Ceric.03G060800.1 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.55 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.02 OrthoFinder output from all 47 species
Cre11.g479750 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.05 OrthoFinder output from all 47 species
Ehy_g19073 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
GSVIVT01033862001 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
LOC_Os11g05552.1 54CP, SRP54CP,... Signal recognition particle 54 kDa protein,... 0.02 OrthoFinder output from all 47 species
LOC_Os11g05556.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.05 OrthoFinder output from all 47 species
Lfl_g04096 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Nbi_g12082 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Ore_g18771 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Pir_g60389 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Spa_g21337 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Tin_g12383 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Zm00001e024147_P003 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.07 OrthoFinder output from all 47 species
Zm00001e039381_P004 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR013822 Signal_recog_particl_SRP54_hlx 108 185
IPR004125 Signal_recog_particle_SRP54_M 429 528
IPR000897 SRP54_GTPase_dom 203 398
No external refs found!