- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : not classified & original description: none
Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g15503 | |
| Cluster | HCCA: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00043p00194480 | HD2, HDA4, HD2B,... | No description available | 0.02 | OrthoFinder output from all 47 species | |
| AT2G27840 | HDA13, HDT04, HDT4 | histone deacetylase-related / HD-related | 0.06 | OrthoFinder output from all 47 species | |
| AT3G44750 | HDA3, ATHD2A, HDT1, HD2A | histone deacetylase 3 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g045241 | HDT3, HD2C | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g106676 | HDT3, HD2C | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g30097 | HD2, HDA4, HD2B,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05943 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0245.g060013 | No alias | not classified & original description: CDS=211-1146 | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g31332 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.33G031600.1 | HDA3, ATHD2A,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000388.65 | ATFKBP53, FKBP53 | Protein modification.protein folding and quality... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g11095 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g41486 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g20303 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03373 | HDA3, ATHD2A, HDT1, HD2A | peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g20489 | HDA3, ATHD2A, HDT1, HD2A | peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01031404001 | HDA3, ATHD2A, HDT1, HD2A | Chromatin organisation.histone modifications.histone... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os05g51830.1 | HDT3, HD2C,... | histone deacetylase (HDT/HD2) | 0.07 | OrthoFinder output from all 47 species | |
| Len_g17092 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06520 | HDT3, HD2C | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| MA_118767g0010 | HDA3, ATHD2A, HDT1, HD2A | histone deacetylase (HDT/HD2) | 0.03 | OrthoFinder output from all 47 species | |
| MA_3905g0020 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_601245g0010 | No alias | histone deacetylase (HDT/HD2) | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g14661 | No alias | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g14662 | No alias | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Smo428242 | No alias | Chromatin organisation.histone modifications.histone... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g40541 | HDT3, HD2C | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g14352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g20431 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e027707_P004 | HDT3, HD2C,... | histone deacetylase (HDT/HD2) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e032246_P002 | HDA3, ATHD2A,... | histone deacetylase (HDT/HD2) | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |