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  5. Aop_g14038

Aop_g14038 (ATML1)


Aliases : ATML1

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g14038
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT1G05230 HDG2 homeodomain GLABROUS 2 0.04 OrthoFinder output from all 47 species
AT5G46880 HDG5, HB-7 homeobox-7 0.03 OrthoFinder output from all 47 species
Ceric.12G070600.1 PDF2, Ceric.12G070600 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.29G064400.1 ATML1, Ceric.29G064400 HD-ZIP IV-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ehy_g05023 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os04g53540.3 PDF2, LOC_Os04g53540 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
LOC_Os08g08820.2 PDF2, LOC_Os08g08820 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
LOC_Os09g35760.1 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
MA_483958g0010 ATML1 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_8859629g0010 PDF2 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Tin_g31372 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 115 170
IPR002913 START_lipid-bd_dom 322 544
No external refs found!