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  5. Aop_g13614

Aop_g13614


Description : NDX-type transcription factor & original description: none


Gene families : OG0003424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13614
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00031700 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Adi_g011555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02709 No alias NDX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07774 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g09630.1 LOC_Os05g09630 transcription factor (NDX) 0.03 OrthoFinder output from all 47 species
MA_86321g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g44275 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12626 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30227 No alias NDX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g074330.3.1 Solyc09g074330 transcription factor (NDX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!