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  5. Aop_g13090

Aop_g13090


Description : component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT) activation complex & original description: none


Gene families : OG0004396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13090

Target Alias Description ECC score Gene Family Method Actions
Adi_g031216 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02041 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Ehy_g14866 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Gb_14574 No alias component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
LOC_Os06g30020.1 LOC_Os06g30020 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Len_g20965 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.04 OrthoFinder output from all 47 species
Ore_g38534 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Solyc03g045060.3.1 Solyc03g045060 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Tin_g11945 No alias component *(ZCCHC8) of Nuclear Exosome TargeTing (NEXT)... 0.06 OrthoFinder output from all 47 species
Zm00001e022737_P001 Zm00001e022737 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 449 496
No external refs found!