Aop_g12628 (RCA)

Aliases : RCA

Description : ATP-dependent activase involved in RuBisCo regulation & original description: none

Gene families : OG0001509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001509_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g12628
Cluster	HCCA: Cluster_271

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00255830	RCA,...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.08	OrthoFinder output from all 47 species
AT2G39730	RCA	rubisco activase	0.17	OrthoFinder output from all 47 species
Adi_g007841	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Adi_g056176	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.03	OrthoFinder output from all 47 species
Adi_g060599	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Adi_g079810	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.13	OrthoFinder output from all 47 species
Aev_g12706	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Aev_g40934	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Ala_g04126	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Ala_g06980	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.11	OrthoFinder output from all 47 species
Als_g03717	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.13	OrthoFinder output from all 47 species
Als_g07530	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.13	OrthoFinder output from all 47 species
Aob_g25713	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Aob_g26956	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.02	OrthoFinder output from all 47 species
Aob_g33583	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.01	OrthoFinder output from all 47 species
Aspi01Gene46212.t1	RCA, Aspi01Gene46212	ATP-dependent activase involved in RuBisCo regulation &...	0.05	OrthoFinder output from all 47 species
Aspi01Gene66678.t1	RCA, Aspi01Gene66678	ATP-dependent activase involved in RuBisCo regulation &...	0.05	OrthoFinder output from all 47 species
Azfi_s0001.g000197	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Azfi_s0007.g011067	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.04	OrthoFinder output from all 47 species
Cba_g02574	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.15	OrthoFinder output from all 47 species
Cba_g15232	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.16	OrthoFinder output from all 47 species
Cba_g69697	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Ceric.12G094300.1	RCA, Ceric.12G094300	ATP-dependent activase involved in RuBisCo regulation &...	0.11	OrthoFinder output from all 47 species
Ceric.12G094500.1	RCA, Ceric.12G094500	ATP-dependent activase involved in RuBisCo regulation &...	0.11	OrthoFinder output from all 47 species
Ceric.12G094700.1	RCA, Ceric.12G094700	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Ceric.12G094800.1	RCA, Ceric.12G094800	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Ceric.28G001900.1	RCA, Ceric.28G001900	ATP-dependent activase involved in RuBisCo regulation &...	0.15	OrthoFinder output from all 47 species
Ceric.28G002100.1	RCA, Ceric.28G002100	ATP-dependent activase involved in RuBisCo regulation &...	0.15	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.90	RCA	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.91	RCA	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.06	OrthoFinder output from all 47 species
Cre04.g229300	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.09	OrthoFinder output from all 47 species
Dac_g08800	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Dac_g13179	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.17	OrthoFinder output from all 47 species
Dcu_g18051	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.12	OrthoFinder output from all 47 species
Dcu_g42045	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Dde_g08345	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.05	OrthoFinder output from all 47 species
Dde_g18636	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.14	OrthoFinder output from all 47 species
Ehy_g03611	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Ehy_g15758	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
GSVIVT01024910001	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.13	OrthoFinder output from all 47 species
GSVIVT01034123001	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.1	OrthoFinder output from all 47 species
Gb_37968	RCA	ATP-dependent activase involved in RuBisCo regulation	0.1	OrthoFinder output from all 47 species
LOC_Os11g47970.1	RCA, LOC_Os11g47970	ATP-dependent activase involved in RuBisCo regulation	0.14	OrthoFinder output from all 47 species
Len_g17744	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.21	OrthoFinder output from all 47 species
Len_g24593	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.16	OrthoFinder output from all 47 species
Lfl_g05580	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Lfl_g10261	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
MA_10433855g0010	RCA	ATP-dependent activase involved in RuBisCo regulation	0.13	OrthoFinder output from all 47 species
Mp3g03990.1	RCA	ATP-dependent activase involved in RuBisCo regulation	0.14	OrthoFinder output from all 47 species
Msp_g06782	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.22	OrthoFinder output from all 47 species
Msp_g10333	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.22	OrthoFinder output from all 47 species
Nbi_g09928	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.13	OrthoFinder output from all 47 species
Nbi_g20650	RCA	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g25439	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Ore_g04065	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Ore_g20242	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Ore_g25744	RCA	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g35469	RCA	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Pir_g08208	RCA	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g23735	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Pir_g41355	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Pnu_g24705	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Pp3c22_12960V3.1	RCA, Pp3c22_12960	rubisco activase	0.03	OrthoFinder output from all 47 species
Ppi_g15847	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.11	OrthoFinder output from all 47 species
Ppi_g29886	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.11	OrthoFinder output from all 47 species
Sam_g09791	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Sam_g28273	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Sam_g28274	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.13	OrthoFinder output from all 47 species
Sam_g28275	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.11	OrthoFinder output from all 47 species
Sam_g38765	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Smo268623	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.13	OrthoFinder output from all 47 species
Solyc10g086580.2.1	RCA, Solyc10g086580	ATP-dependent activase involved in RuBisCo regulation	0.16	OrthoFinder output from all 47 species
Spa_g05667	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.16	OrthoFinder output from all 47 species
Spa_g05668	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.18	OrthoFinder output from all 47 species
Spa_g29802	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.24	OrthoFinder output from all 47 species
Tin_g03996	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.12	OrthoFinder output from all 47 species
Tin_g07636	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.14	OrthoFinder output from all 47 species
Zm00001e020928_P001	RCA, Zm00001e020928	ATP-dependent activase involved in RuBisCo regulation	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	217	359

External Links

No external refs found!

Aop_g12628 (RCA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation