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  5. Aop_g11886

Aop_g11886 (HIRA)


Aliases : HIRA

Description : component *(HIRA) of HIRA chaperone complex & original description: none


Gene families : OG0003681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003681_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g11886
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT3G44530 HIRA homolog of histone chaperone HIRA 0.02 OrthoFinder output from all 47 species
Als_g14673 HIRA component *(HIRA) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026852 HIRA component *(HIRA) of HIRA chaperone complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.06G035200.1 HIRA, Ceric.06G035200 component *(HIRA) of HIRA chaperone complex & original... 0.02 OrthoFinder output from all 47 species
Dac_g01033 HIRA component *(HIRA) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g22405 HIRA component *(HIRA) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01036170001 HIRA Chromatin organisation.histone chaperone... 0.04 OrthoFinder output from all 47 species
Gb_02983 HIRA histone chaperone (HIRA) 0.04 OrthoFinder output from all 47 species
LOC_Os09g39420.1 HIRA, LOC_Os09g39420 histone chaperone (HIRA) 0.02 OrthoFinder output from all 47 species
Solyc11g067200.2.1 HIRA, Solyc11g067200 histone chaperone (HIRA) 0.03 OrthoFinder output from all 47 species
Tin_g01234 HIRA component *(HIRA) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e016618_P001 HIRA, Zm00001e016618 histone chaperone (HIRA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011494 Hira 685 885
IPR001680 WD40_repeat 16 41
IPR001680 WD40_repeat 159 195
IPR001680 WD40_repeat 117 154
IPR001680 WD40_repeat 58 93
No external refs found!