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  5. Lfl_g09718

Lfl_g09718 (RST1)


Aliases : RST1

Description : regulatory cofactor *(RST1) of exosome complex & original description: none


Gene families : OG0004554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004554_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g09718
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00082p00059940 RST1,... Protein RST1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G27670 RST1 ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g055838 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species
Aop_g14315 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22717.t1 Aspi01Gene22717 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G038700.1 RST1, Ceric.12G038700 regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species
Cre01.g010650 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g15958 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01032418001 RST1 Protein RST1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_07737 RST1 regulatory cofactor (RST1) of exosome complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g07490.1 RST1, LOC_Os01g07490 regulatory cofactor (RST1) of exosome complex 0.04 OrthoFinder output from all 47 species
Ore_g37140 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g30835 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012444 No alias regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species
Sam_g11649 No alias regulatory cofactor *(RST1) of exosome complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061666 UFM1 ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022542 FOCAD/RST1_DUF3730 549 752
No external refs found!