Lfl_g09667


Description : cohesin cofactor *(PDS5) & original description: none


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g09667
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00192140 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.08 OrthoFinder output from all 47 species
AT1G77600 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.04 OrthoFinder output from all 47 species
AT5G47690 No alias binding 0.06 OrthoFinder output from all 47 species
Adi_g019469 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g045350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117140 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g06778 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18795 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g32765 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g11522 No alias cohesin cofactor *(PDS5) & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g20243 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g03900 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g62298 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07435 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g08128 No alias cohesin cofactor *(PDS5) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g69987 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene04214.t1 Aspi01Gene04214 cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009277 No alias cohesin cofactor *(PDS5) & original description: CDS=453-4370 0.05 OrthoFinder output from all 47 species
Azfi_s0310.g064146 No alias cohesin cofactor *(PDS5) & original description: CDS=585-5357 0.03 OrthoFinder output from all 47 species
Cba_g04527 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g16434 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18100 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G037000.1 Ceric.11G037000 cohesin cofactor *(PDS5) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.37G021700.1 Ceric.37G021700 cohesin cofactor *(PDS5) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g29223 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g14818 No alias cohesin cofactor *(PDS5) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g36421 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g09843 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22023 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02974 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06232 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.08 OrthoFinder output from all 47 species
GSVIVT01002824001 No alias No description available 0.11 OrthoFinder output from all 47 species
GSVIVT01008876001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.09 OrthoFinder output from all 47 species
Gb_02487 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Gb_06732 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Gb_09525 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Gb_12481 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Gb_23673 No alias cohesin cofactor (PDS5) 0.07 OrthoFinder output from all 47 species
LOC_Os02g39920.1 LOC_Os02g39920 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os04g25960.1 LOC_Os04g25960 cohesin cofactor (PDS5) 0.01 OrthoFinder output from all 47 species
LOC_Os06g17840.1 LOC_Os06g17840 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Len_g21353 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g21968 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Len_g46602 No alias cohesin cofactor *(PDS5) & original description: none 0.1 OrthoFinder output from all 47 species
MA_10093130g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10426926g0010 No alias cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
MA_10433886g0010 No alias cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
MA_10434304g0010 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
MA_180523g0010 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
MA_214607g0010 No alias cohesin cofactor (PDS5) 0.08 OrthoFinder output from all 47 species
MA_523g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Msp_g25546 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25803 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g18971 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28747 No alias cohesin cofactor *(PDS5) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g04827 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g18717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44286 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g16328 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20541 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g59813 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003457 No alias cohesin cofactor *(PDS5) & original description: CDS=365-5053 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011973 No alias cohesin cofactor *(PDS5) & original description: CDS=154-4911 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020186 No alias exoribonuclease *(SOV) & original description: CDS=109-2307 0.03 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g18018 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g18046 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g24524 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35729 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g36827 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g065710.3.1 Solyc06g065710 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.1 OrthoFinder output from all 47 species
Spa_g09270 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g09451 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18111 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g02194 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11324 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007658_P001 Zm00001e007658 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Zm00001e015094_P002 Zm00001e015094 cohesin cofactor (PDS5) 0.09 OrthoFinder output from all 47 species
Zm00001e019139_P001 Zm00001e019139 cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
Zm00001e022962_P003 Zm00001e022962 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Zm00001e030989_P001 Zm00001e030989 cohesin cofactor (PDS5) 0.08 OrthoFinder output from all 47 species
Zm00001e036853_P003 Zm00001e036853 cohesin cofactor (PDS5) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!