Aop_g08467

Description : regulatory component *(RPT4) of 26S proteasome & original description: none

Gene families : OG0004670 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004670_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g08467

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00083p00095580	evm_27.TU.AmTr_v1...	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
AT1G45000	No alias	AAA-type ATPase family protein	0.02	OrthoFinder output from all 47 species
AT5G43010	RPT4A	regulatory particle triple-A ATPase 4A	0.03	OrthoFinder output from all 47 species
Aev_g05319	RPT4A	regulatory component *(RPT4) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Ala_g01731	No alias	regulatory component *(RPT4) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000718.6	No alias	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
Cre17.g710150	No alias	Protein degradation.26S proteasome.regulatory...	0.07	OrthoFinder output from all 47 species
Dcu_g05442	RPT4A	regulatory component *(RPT4) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
GSVIVT01023828001	No alias	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
Gb_31524	No alias	regulatory component RPT4 of 26S proteasome	0.03	OrthoFinder output from all 47 species
LOC_Os02g10640.1	LOC_Os02g10640	regulatory component RPT4 of 26S proteasome	0.05	OrthoFinder output from all 47 species
LOC_Os06g40560.1	LOC_Os06g40560	regulatory component RPT4 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Mp7g14270.1	No alias	regulatory component RPT4 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Nbi_g11581	RPT4A	regulatory component *(RPT4) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Ore_g06165	RPT4A	regulatory component *(RPT4) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species
Sam_g07453	No alias	regulatory component *(RPT4) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Smo171164	RPT4A	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
Solyc01g109940.3.1	Solyc01g109940	regulatory component RPT4 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Tin_g16778	RPT4A	regulatory component *(RPT4) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Zm00001e014032_P001	Zm00001e014032	regulatory component RPT4 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Zm00001e025009_P001	Zm00001e025009	regulatory component RPT4 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Zm00001e037434_P001	RPT4A, Zm00001e037434	regulatory component RPT4 of 26S proteasome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
CC	GO:0000781	chromosome, telomeric region	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019905	syntaxin binding	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0035299	inositol pentakisphosphate 2-kinase activity	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0042176	regulation of protein catabolic process	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032501	Prot_ATP_ID_OB_C	62	117
IPR003959	ATPase_AAA_core	175	308
IPR041569	AAA_lid_3	331	373

External Links

No external refs found!

Aop_g08467

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation