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  5. Aop_g08359

Aop_g08359 (ATRAP, RAP)


Aliases : ATRAP, RAP

Description : 16S-rRNA maturation factor *(RAP) & original description: none


Gene families : OG0002819 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002819_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08359
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00101500 ATRAP, RAP,... RAP domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT2G31890 ATRAP, RAP RAP 0.1 OrthoFinder output from all 47 species
Adi_g008836 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g02427 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G056200.1 ATRAP, RAP,... 16S-rRNA maturation factor *(RAP) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000385.16 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g389541 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01038263001 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os03g31150.3 ATRAP, RAP,... RAP domain-containing protein, chloroplastic OS=Oryza... 0.06 OrthoFinder output from all 47 species
Lfl_g05571 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
MA_8868156g0010 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp2g23920.1 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
Mp2g23930.1 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
Nbi_g17991 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g28364 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16092 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24589 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.04 OrthoFinder output from all 47 species
Smo412574 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Smo413123 ATRAP, RAP RAP domain-containing protein, chloroplastic OS=Oryza... 0.05 OrthoFinder output from all 47 species
Solyc12g017510.2.1 ATRAP, RAP,... RAP domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Zm00001e016550_P002 ATRAP, RAP,... RAP domain-containing protein, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013584 RAP 647 703
No external refs found!