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  5. Aop_g06130

Aop_g06130


Description : not classified & original description: none


Gene families : OG0006517 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06130
Cluster HCCA: Cluster_271

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00133p00054340 evm_27.TU.AmTr_v1... PsbP domain-containing protein 3, chloroplastic... 0.04 OrthoFinder output from all 47 species
AT1G76450 No alias Photosystem II reaction center PsbP family protein 0.15 OrthoFinder output from all 47 species
Aev_g38210 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g08526 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g32184 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g18492 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g12145 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.16G011400.1 Ceric.16G011400 not classified & original description: pacid=50589110... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021682.6 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre10.g446350 No alias PsbP domain-containing protein 3, chloroplastic... 0.01 OrthoFinder output from all 47 species
Dac_g03626 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g12329 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g07431 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g00853 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01013427001 No alias PsbP domain-containing protein 3, chloroplastic... 0.12 OrthoFinder output from all 47 species
LOC_Os08g40160.1 LOC_Os08g40160 PsbP domain-containing protein 3, chloroplastic... 0.04 OrthoFinder output from all 47 species
Len_g08264 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g05889 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_135370g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g06533 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Pir_g08785 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Pnu_g17486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0227.g026375 No alias not classified & original description: CDS=59-778 0.08 OrthoFinder output from all 47 species
Sam_g35958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo448162 No alias PsbP domain-containing protein 3, chloroplastic... 0.1 OrthoFinder output from all 47 species
Spa_g24667 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Zm00001e003568_P001 Zm00001e003568 PsbP domain-containing protein 3, chloroplastic... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 81 239
No external refs found!