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Aliases : LHCB4.1
Description : component *(LHCb4) of LHC-II complex & original description: none
Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00239610 | LHCB4.2,... | Photosynthesis.photophosphorylation.photosystem... | 0.13 | OrthoFinder output from all 47 species | |
| AT3G08940 | LHCB4.2 | light harvesting complex photosystem II | 0.12 | OrthoFinder output from all 47 species | |
| AT5G01530 | LHCB4.1 | light harvesting complex photosystem II | 0.16 | OrthoFinder output from all 47 species | |
| Adi_g047687 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.17 | OrthoFinder output from all 47 species | |
| Adi_g079332 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Aev_g13668 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g11240 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Als_g08280 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Aob_g39718 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Aspi01Gene47726.t1 | LHCB4.1, Aspi01Gene47726 | component *(LHCb4) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Azfi_s0173.g055756 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original... | 0.11 | OrthoFinder output from all 47 species | |
| Cba_g11090 | No alias | component *(LHCb4) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Cba_g34516 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.05G075200.1 | LHCB4.2, Ceric.05G075200 | component *(LHCb4) of LHC-II complex & original... | 0.23 | OrthoFinder output from all 47 species | |
| Ceric.22G069400.1 | LHCB4.1, Ceric.22G069400 | component *(LHCb4) of LHC-II complex & original... | 0.21 | OrthoFinder output from all 47 species | |
| Cre17.g720250 | LHCB4.3 | Photosynthesis.photophosphorylation.photosystem... | 0.14 | OrthoFinder output from all 47 species | |
| Dac_g23809 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Dcu_g45560 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Dcu_g49585 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Dde_g10605 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Ehy_g03348 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ehy_g21710 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Gb_13368 | LHCB4.3 | component LHCb4 of LHC-II complex | 0.07 | OrthoFinder output from all 47 species | |
| Gb_38595 | LHCB4.1 | component LHCb4 of LHC-II complex | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os07g37240.1 | LHCB4.1, LOC_Os07g37240 | component LHCb4 of LHC-II complex | 0.13 | OrthoFinder output from all 47 species | |
| Len_g31128 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.19 | OrthoFinder output from all 47 species | |
| Len_g34078 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_129206g0010 | LHCB4.2 | component LHCb4 of LHC-II complex | 0.15 | OrthoFinder output from all 47 species | |
| Mp1g16850.1 | LHCB4.1 | component LHCb4 of LHC-II complex | 0.19 | OrthoFinder output from all 47 species | |
| Msp_g07941 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Nbi_g01855 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.17 | OrthoFinder output from all 47 species | |
| Pir_g15460 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Pnu_g33035 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Pp3c12_25460V3.1 | LHCB4.1, Pp3c12_25460 | light harvesting complex photosystem II | 0.08 | OrthoFinder output from all 47 species | |
| Ppi_g08836 | LHCB4.3 | component *(LHCb4) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g15010 | LHCB4.2 | component *(LHCb4) of LHC-II complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0067.g016319 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 47 species | |
| Smo149722 | LHCB4.2 | Photosynthesis.photophosphorylation.photosystem... | 0.1 | OrthoFinder output from all 47 species | |
| Solyc09g014520.3.1 | LHCB4.1, Solyc09g014520 | component LHCb4 of LHC-II complex | 0.15 | OrthoFinder output from all 47 species | |
| Spa_g08357 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Spa_g50929 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Spa_g50931 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Tin_g08576 | LHCB4.1 | component *(LHCb4) of LHC-II complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Zm00001e010547_P001 | LHCB4.1, Zm00001e010547 | component LHCb4 of LHC-II complex | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e035235_P001 | LHCB4.1, Zm00001e035235 | component LHCb4 of LHC-II complex | 0.12 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008942 | nitrite reductase [NAD(P)H] activity | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| MF | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| MF | GO:0046857 | oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| MF | GO:0051287 | NAD binding | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| MF | GO:0071949 | FAD binding | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| MF | GO:0098809 | nitrite reductase activity | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 65 | 261 |
| No external refs found! |