Aliases : PUB38, ATPUB38
Description : U-Box-group-II E3 ubiquitin ligase & original description: none
Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Aop_g04662 | |
Cluster | HCCA: Cluster_31 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00012p00240140 | evm_27.TU.AmTr_v1... | U-box domain-containing protein 4 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
AT3G47820 | PUB39 | PLANT U-BOX 39 | 0.05 | OrthoFinder output from all 47 species | |
AT5G65200 | PUB38, ATPUB38 | plant U-box 38 | 0.02 | OrthoFinder output from all 47 species | |
Ala_g10271 | No alias | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G042800.1 | ATPUB45, PUB45,... | U-Box-group-II E3 ubiquitin ligase & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G047200.1 | PUB39, Ceric.29G047200 | U-Box-group-II E3 ubiquitin ligase & original... | 0.07 | OrthoFinder output from all 47 species | |
Dac_g08018 | PUB39 | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g40033 | PUB38, ATPUB38 | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Gb_16859 | PUB38, ATPUB38 | E3 ubiquitin ligase (PUB) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os06g13090.1 | PUB39, LOC_Os06g13090 | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g21740.1 | PUB38, ATPUB38,... | E3 ubiquitin ligase (PUB) | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g02186 | PUB38, ATPUB38 | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g15300 | No alias | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g03752 | PUB12, AtPUB12 | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0003.g001736 | PUB39 | U-Box-group-II E3 ubiquitin ligase & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g15402 | PUB38, ATPUB38 | U-Box-group-II E3 ubiquitin ligase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Tin_g22128 | No alias | U-Box-group-II E3 ubiquiTin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004842 | ubiquitin-protein transferase activity | IEA | Interproscan |
BP | GO:0016567 | protein ubiquitination | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
MF | GO:0004672 | protein kinase activity | IEP | HCCA |
MF | GO:0005215 | transporter activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
MF | GO:0008107 | galactoside 2-alpha-L-fucosyltransferase activity | IEP | HCCA |
MF | GO:0008417 | fucosyltransferase activity | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
MF | GO:0016301 | kinase activity | IEP | HCCA |
BP | GO:0016310 | phosphorylation | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0031127 | alpha-(1,2)-fucosyltransferase activity | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0042546 | cell wall biogenesis | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0055085 | transmembrane transport | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003613 | Ubox_domain | 9 | 77 |
No external refs found! |