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  5. Aop_g04016

Aop_g04016


Description : component *(Snu13) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g04016

Target Alias Description ECC score Gene Family Method Actions
AT4G22380 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 OrthoFinder output from all 47 species
Ceric.03G070800.1 Ceric.03G070800 component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000600.11 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Dac_g02506 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
LOC_Os03g13800.1 LOC_Os03g13800 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Mp7g12360.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021645 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.02 OrthoFinder output from all 47 species
Spa_g54159 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.06 OrthoFinder output from all 47 species
Spa_g56417 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Tin_g30682 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.09 OrthoFinder output from all 47 species
Zm00001e001004_P001 Zm00001e001004 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 25 111
No external refs found!