1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g08945

Lfl_g08945 (APUM2, PUM2)


Aliases : APUM2, PUM2

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g08945

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.04 OrthoFinder output from all 47 species
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g041741 PUM5, APUM5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0205.g057726 APUM2, PUM2 not classified & original description: CDS=300-3455 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25094 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g74030.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_42218g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_9025256g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g27289 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11828 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021041 APUM2, PUM2 not classified & original description: CDS=822-3881 0.03 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g12530 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05236 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004930 G protein-coupled receptor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 810 843
IPR001313 Pumilio_RNA-bd_rpt 920 952
IPR001313 Pumilio_RNA-bd_rpt 955 988
IPR001313 Pumilio_RNA-bd_rpt 774 807
IPR001313 Pumilio_RNA-bd_rpt 852 877
IPR001313 Pumilio_RNA-bd_rpt 1001 1030
IPR001313 Pumilio_RNA-bd_rpt 882 917
IPR001313 Pumilio_RNA-bd_rpt 738 772
IPR012940 NABP 373 733
No external refs found!