Aop_g02373

Description : component *(uS12) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g02373
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00204160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT5G02960	No alias	Ribosomal protein S12/S23 family protein	0.08	OrthoFinder output from all 47 species
Adi_g052909	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g052910	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g087932	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s4142.g118106	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Cre12.g504200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g04209	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g08120	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01016341001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01025120001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01025626001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Gb_02361	No alias	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
Gb_36570	No alias	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os01g61814.1	LOC_Os01g61814	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os03g60400.1	LOC_Os03g60400	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
Len_g17887	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_10436470g0020	No alias	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
MA_19871g0020	No alias	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_9043057g0010	No alias	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.08	OrthoFinder output from all 47 species
Msp_g12711	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Msp_g40932	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_11070V3.1	Pp3c11_11070	Ribosomal protein S12/S23 family protein	0.03	OrthoFinder output from all 47 species
Pp3c4_3120V3.1	Pp3c4_3120	Ribosomal protein S12/S23 family protein	0.06	OrthoFinder output from all 47 species
Pp3c7_14200V3.1	Pp3c7_14200	Ribosomal protein S12/S23 family protein	0.04	OrthoFinder output from all 47 species
Sam_g15614	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g19537	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g23987	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc09g007350.3.1	Solyc09g007350	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc10g084310.2.1	Solyc10g084310	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc10g086020.3.1	Solyc10g086020	component RPS23 of SSU proteome	0.09	OrthoFinder output from all 47 species
Tin_g03594	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g26329	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e006170_P001	Zm00001e006170	component RPS23 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e011770_P001	Zm00001e011770	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e019377_P001	Zm00001e019377	component RPS23 of SSU proteome	0.07	OrthoFinder output from all 47 species
Zm00001e027265_P001	Zm00001e027265	component RPS23 of SSU proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0017182	peptidyl-diphthamide metabolic process	IEP	HCCA
BP	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018202	peptidyl-histidine modification	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0090560	2-(3-amino-3-carboxypropyl)histidine synthase activity	IEP	HCCA
BP	GO:0110154	RNA decapping	IEP	HCCA
BP	GO:0110156	methylguanosine-cap decapping	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1900247	regulation of cytoplasmic translational elongation	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	30	141

External Links

No external refs found!

Aop_g02373

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation