Aop_g00917

Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g00917

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00158320	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AMTR_s00046p00028310	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT3G48930	EMB1080	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
AT4G30800	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from all 47 species
AT5G23740	RPS11-BETA	ribosomal protein S11-beta	0.04	OrthoFinder output from all 47 species
Adi_g021181	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g34347	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g19623	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene71270.t1	Aspi01Gene71270	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0268.g061080	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cre12.g514500	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Dac_g01215	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01012877001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01035927001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Gb_14912	EMB1080	component RPS11 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os04g52361.1	EMB1080, LOC_Os04g52361	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os08g10608.1	RPS11-BETA,...	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species
Len_g54645	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_19350g0010	EMB1080	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp4g23360.1	EMB1080	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp6g10500.1	EMB1080	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Msp_g27112	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g01705	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pir_g02162	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c1_27980V3.1	EMB1080, Pp3c1_27980	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Pp3c2_13690V3.1	EMB1080, Pp3c2_13690	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Sam_g12787	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo268639	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc06g073790.3.1	Solyc06g073790	component RPS11 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc06g073800.3.1	Solyc06g073800	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc12g042080.2.1	Solyc12g042080	component RPS11 of SSU proteome	0.02	OrthoFinder output from all 47 species
Spa_g08091	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g22575	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g03064	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e006955_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	4	72
IPR000266	Ribosomal_S17/S11	74	142

External Links

No external refs found!

Aop_g00917

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation