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  5. Aop_g00191

Aop_g00191


Description : assembly factor involved in RuBisCo assembly *(RbcX) & original description: none


Gene families : OG0005102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g00191
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Aev_g32609 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ala_g00458 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Aob_g01138 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Aob_g25994 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Cba_g46690 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Ceric.15G035500.1 Ceric.15G035500 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Dac_g08983 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Dcu_g04377 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Dde_g46091 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Ehy_g00615 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01032095001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Gb_02161 No alias RbcX assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species
Len_g00251 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Lfl_g05877 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Mp1g26500.1 No alias RbcX assembly factor involved in RuBisCo assembly 0.05 OrthoFinder output from all 47 species
Pir_g00338 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Pnu_g13514 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Ppi_g00617 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Spa_g13070 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Zm00001e011815_P001 Zm00001e011815 RbcX assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0044183 protein folding chaperone IEA Interproscan
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 91 192
No external refs found!