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  5. Lfl_g07402

Lfl_g07402


Description : not classified & original description: none


Gene families : OG0001264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g07402
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Ala_g06674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G003300.1 Ceric.08G003300 not classified & original description: pacid=50638706... 0.04 OrthoFinder output from all 47 species
Ceric.1Z218900.1 Ceric.1Z218900 not classified & original description: pacid=50637330... 0.03 OrthoFinder output from all 47 species
Ceric.30G033300.1 Ceric.30G033300 not classified & original description: pacid=50608686... 0.05 OrthoFinder output from all 47 species
Dde_g05901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g11720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0295.g027183 No alias not classified & original description: CDS=1-1983 0.03 OrthoFinder output from all 47 species
Spa_g07310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15426 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09598 No alias PIP/PIPL precursor polypeptide & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 210 236
IPR002885 Pentatricopeptide_repeat 177 203
IPR002885 Pentatricopeptide_repeat 618 647
IPR002885 Pentatricopeptide_repeat 478 511
IPR002885 Pentatricopeptide_repeat 514 546
IPR002885 Pentatricopeptide_repeat 416 460
IPR002885 Pentatricopeptide_repeat 552 601
IPR002885 Pentatricopeptide_repeat 310 358
IPR002885 Pentatricopeptide_repeat 242 290
No external refs found!