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  5. Lfl_g07367

Lfl_g07367


Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g07367

Target Alias Description ECC score Gene Family Method Actions
AT1G15280 No alias CASC3/Barentsz eIF4AIII binding 0.04 OrthoFinder output from all 47 species
Adi_g004430 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aev_g20399 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g14440 No alias component *(CASC3) of RNA quality control Exon Junction... 0.08 OrthoFinder output from all 47 species
Aop_g13512 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11995.t2 Aspi01Gene11995 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene44752.t1 Aspi01Gene44752 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g37603 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g75996 No alias component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ceric.15G073300.1 Ceric.15G073300 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.26G046100.1 Ceric.26G046100 component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Dac_g09674 No alias component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Dcu_g14577 No alias component *(CASC3) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Ehy_g30112 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01017130001 No alias RNA processing.RNA quality control Exon Junction complex... 0.05 OrthoFinder output from all 47 species
LOC_Os01g41190.2 LOC_Os01g41190 component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Msp_g38129 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g02704 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37838 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pnu_g31460 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32199 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Solyc12g042990.3.1 Solyc12g042990 component CASC3 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Spa_g54006 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Zm00001e020605_P001 Zm00001e020605 component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Zm00001e027475_P001 Zm00001e027475 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Zm00001e027824_P002 Zm00001e027824 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Zm00001e032233_P001 Zm00001e032233 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 132 217
No external refs found!