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  5. Lfl_g05757

Lfl_g05757


Description : PHD finger transcription factor & original description: none


Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05757
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT5G12400 No alias DNA binding;zinc ion binding;DNA binding 0.03 OrthoFinder output from all 47 species
AT5G22760 No alias PHD finger family protein 0.02 OrthoFinder output from all 47 species
AT5G35210 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.05 OrthoFinder output from all 47 species
Adi_g023154 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107345 No alias PHD finger transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g10447 No alias PHD finger transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10761.t1 Aspi01Gene10761 PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36310.t1 Aspi01Gene36310 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36311.t1 Aspi01Gene36311 PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.29G051900.1 Ceric.29G051900 PHD finger transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cre05.g247000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g14658 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04154 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40975 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09845 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17420 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031411001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.07 OrthoFinder output from all 47 species
GSVIVT01037231001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
LOC_Os07g46690.1 LOC_Os07g46690 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os11g05130.1 LOC_Os11g05130 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
MA_10689g0010 No alias PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Mp4g03480.1 No alias PHD finger transcription factor 0.06 OrthoFinder output from all 47 species
Msp_g48762 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38137 No alias PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20406 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03291 No alias PHD finger transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g25995 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo441144 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
Solyc11g065160.3.1 Solyc11g065160 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc11g066780.3.1 Solyc11g066780 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e035778_P001 Zm00001e035778 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 258 312
IPR028942 WHIM1_dom 366 402
IPR019787 Znf_PHD-finger 474 516
No external refs found!