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  5. Lfl_g05749

Lfl_g05749


Description : not classified & original description: none


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05749

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00122030 evm_27.TU.AmTr_v1... Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g107387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18903 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.04 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.03 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_20787 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10430470g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10434824g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_24634g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_9624g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp8g09710.1 No alias MATH domain and coiled-coil domain-containing protein... 0.02 OrthoFinder output from all 47 species
Msp_g47722 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Ore_g29897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016184 No alias not classified & original description: CDS=189-5282 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023847 No alias not classified & original description: CDS=1-5244 0.04 OrthoFinder output from all 47 species
Spa_g37203 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 8 77
IPR002083 MATH/TRAF_dom 299 406
IPR002083 MATH/TRAF_dom 448 541
No external refs found!