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  5. Lfl_g05693

Lfl_g05693


Description : not classified & original description: none


Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05693
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242110 evm_27.TU.AmTr_v1... ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
AT3G02060 No alias DEAD/DEAH box helicase, putative 0.02 OrthoFinder output from all 47 species
Aev_g07951 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g17279 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g22379 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene67885.t1 Aspi01Gene67885 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.13G022800.1 Ceric.13G022800 not classified & original description: pacid=50636376... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.51 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.01 OrthoFinder output from all 47 species
Dde_g04918 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g08581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_38755 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species
LOC_Os11g32880.1 LOC_Os11g32880 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species
Len_g28141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436969g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
MA_190693g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
MA_9353463g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp2g07230.1 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.06 OrthoFinder output from all 47 species
Nbi_g10930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439 No alias not classified & original description: CDS=315-2762 0.03 OrthoFinder output from all 47 species
Sam_g42734 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo77276 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 338 496
IPR003711 CarD-like/TRCF_RID 214 308
IPR001650 Helicase_C 544 643
No external refs found!