Lfl_g05564

Description : subunit gamma *(CCT3) of CCT chaperonin folding complex & original description: none

Gene families : OG0005075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005075_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g05564

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00176500	evm_27.TU.AmTr_v1...	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.02	OrthoFinder output from all 47 species
Adi_g087113	No alias	subunit gamma *(CCT3) of CCT chaperonin folding complex...	0.04	OrthoFinder output from all 47 species
Ceric.25G052600.1	Ceric.25G052600	subunit gamma *(CCT3) of CCT chaperonin folding complex...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.79	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.01	OrthoFinder output from all 47 species
Cre10.g443250	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.02	OrthoFinder output from all 47 species
LOC_Os06g34690.1	LOC_Os06g34690	CCT3 subunit gamma of CCT chaperonin folding complex	0.02	OrthoFinder output from all 47 species
Len_g00631	No alias	subunit gamma *(CCT3) of CCT chaperonin folding complex...	0.04	OrthoFinder output from all 47 species
Solyc05g056310.3.1	Solyc05g056310	CCT3 subunit gamma of CCT chaperonin folding complex	0.02	OrthoFinder output from all 47 species
Zm00001e000822_P001	Zm00001e000822	CCT3 subunit gamma of CCT chaperonin folding complex	0.02	OrthoFinder output from all 47 species
Zm00001e024916_P001	Zm00001e024916	CCT3 subunit gamma of CCT chaperonin folding complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	31	524

External Links

No external refs found!