1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g04111

Lfl_g04111 (HOS15)


Aliases : HOS15

Description : component *(HOS15) of HDA9-PWR deacetylation complex & original description: none


Gene families : OG0003691 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003691_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04111
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Adi_g055561 HOS15 component *(HOS15) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Ala_g14268 HOS15 component *(HOS15) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Ceric.35G003200.1 HOS15, Ceric.35G003200 component *(HOS15) of HDA9-PWR deacetylation complex &... 0.06 OrthoFinder output from all 47 species
Cre12.g527500 HOS15 WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os07g22220.1 HOS15, LOC_Os07g22220 component HOS15 of HDA9-PWR deacetylation complex 0.02 OrthoFinder output from all 47 species
Mp6g00250.1 HOS15 component HOS15 of HDA9-PWR deacetylation complex 0.05 OrthoFinder output from all 47 species
Ppi_g04606 HOS15 component *(HOS15) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Smo90375 HOS15 WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Solyc04g078320.4.1 HOS15, Solyc04g078320 component HOS15 of HDA9-PWR deacetylation complex 0.04 OrthoFinder output from all 47 species
Spa_g08063 HOS15 component *(HOS15) of HDA9-PWR deacetylation complex &... 0.02 OrthoFinder output from all 47 species
Tin_g25040 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e008690_P001 HOS15, Zm00001e008690 component HOS15 of HDA9-PWR deacetylation complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 335 374
IPR001680 WD40_repeat 380 415
IPR001680 WD40_repeat 461 498
IPR001680 WD40_repeat 503 549
IPR001680 WD40_repeat 280 314
IPR001680 WD40_repeat 556 591
IPR006594 LisH 8 32
No external refs found!