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  5. Ala_g25978

Ala_g25978


Description : not classified & original description: none


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g25978

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00056140 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.02 OrthoFinder output from all 47 species
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.02 OrthoFinder output from all 47 species
AT4G33810 No alias Glycosyl hydrolase superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g10327 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Azfi_s0207.g057923 No alias not classified & original description: CDS=1-1875 0.03 OrthoFinder output from all 47 species
Ehy_g26905 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.03 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.06 OrthoFinder output from all 47 species
LOC_Os01g04300.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
LOC_Os03g10469.1 LOC_Os03g10469 no description available(sp|q680b7|xyn4_arath : 358.0) 0.03 OrthoFinder output from all 47 species
LOC_Os03g14010.1 LOC_Os03g14010 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.04 OrthoFinder output from all 47 species
LOC_Os05g23350.1 LOC_Os05g23350 endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
LOC_Os10g21110.1 LOC_Os10g21110 no description available(sp|q680b7|xyn4_arath : 358.0) 0.04 OrthoFinder output from all 47 species
MA_10434167g0010 No alias no description available(sp|a0a1p8awh8|xyn1_arath : 102.0) 0.02 OrthoFinder output from all 47 species
Msp_g31883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27615 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo420481 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc01g106990.2.1 Solyc01g106990 no description available(sp|q84wt5|xyn5l_arath : 338.0) 0.03 OrthoFinder output from all 47 species
Solyc05g051260.3.1 Solyc05g051260 no description available(sp|q84wt5|xyn5l_arath : 344.0) 0.04 OrthoFinder output from all 47 species
Solyc10g055370.2.1 Solyc10g055370 no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0) 0.03 OrthoFinder output from all 47 species
Tin_g27477 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e002760_P001 Zm00001e002760 no description available(sp|q680b7|xyn4_arath : 360.0) 0.03 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
Zm00001e040632_P001 Zm00001e040632 no description available(sp|q680b7|xyn4_arath : 318.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 259 523
No external refs found!