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  5. Ala_g25084

Ala_g25084


Description : RNA editing factor *(PDM2) & original description: none


Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g25084
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00085920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10910,... 0.05 OrthoFinder output from all 47 species
Adi_g083413 No alias RNA editing factor *(PDM2) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g17655 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24122 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00767 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14195.t1 Aspi01Gene14195 RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02683 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G067700.1 Ceric.11G067700 RNA editing factor *(PDM2) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g05612 No alias RNA editing factor *(PDM2) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g11807 No alias RNA editing factor *(PDM2) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g13080 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os01g37870.4 LOC_Os01g37870 Pentatricopeptide repeat-containing protein At1g10910,... 0.06 OrthoFinder output from all 47 species
Nbi_g08999 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g10589 No alias RNA editing factor *(PDM2) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g19491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g040260.2.1 Solyc11g040260 Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Zm00001e020710_P002 Zm00001e020710 Pentatricopeptide repeat-containing protein At1g10910,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 587 615
IPR002885 Pentatricopeptide_repeat 555 580
IPR033443 PPR_long 248 394
IPR002885 Pentatricopeptide_repeat 481 526
IPR002885 Pentatricopeptide_repeat 406 455
No external refs found!