Ala_g20021 (SRCAP, PIE1, chr13)

Aliases : SRCAP, PIE1, chr13

Description : ATPase component *(PIE1) of SWR1 chromatin remodeling complex & original description: none

Gene families : OG0002986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g20021

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00089520	SRCAP, PIE1,...	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
AT3G12810	SRCAP, PIE1, chr13	SNF2 domain-containing protein / helicase...	0.05	OrthoFinder output from all 47 species
Adi_g046504	SRCAP, PIE1, chr13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086891	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Als_g04504	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.08	OrthoFinder output from all 47 species
Als_g11978	SRCAP, PIE1, chr13	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g13991	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Aspi01Gene00837.t1	SRCAP, PIE1,...	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.22G011100.1	SRCAP, PIE1,...	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000194.26	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.02	OrthoFinder output from all 47 species
Cre14.g618860	SRCAP, PIE1, chr13	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Dcu_g08326	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.17	OrthoFinder output from all 47 species
Dcu_g39491	SRCAP, PIE1, chr13	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g22840	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
GSVIVT01033511001	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.1	OrthoFinder output from all 47 species
Gb_04358	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
LOC_Os02g46450.2	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species
Len_g28435	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
MA_424432g0010	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.09	OrthoFinder output from all 47 species
MA_64269g0010	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.05	OrthoFinder output from all 47 species
Mp7g15670.1	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species
Msp_g15065	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Nbi_g13998	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Ore_g38204	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Pir_g11854	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Ppi_g56964	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005513	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Sam_g11626	No alias	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc03g063210.3.1	SRCAP, PIE1,...	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.05	OrthoFinder output from all 47 species
Solyc03g063220.2.1	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.08	OrthoFinder output from all 47 species
Spa_g09110	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.09	OrthoFinder output from all 47 species
Zm00001e015483_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species
Zm00001e023267_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	208	480
IPR001650	Helicase_C	735	846

External Links

No external refs found!

Ala_g20021 (SRCAP, PIE1, chr13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation