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Aliases : RACK1C_AT
Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome & original description: none
Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ala_g12720 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00105p00058690 | RACK1B_AT,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G48630 | RACK1B_AT | receptor for activated C kinase 1B | 0.05 | OrthoFinder output from all 47 species | |
| AT3G18130 | RACK1C_AT | receptor for activated C kinase 1C | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g076309 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g00477 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g06871 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0113.g045894 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.02G088700.1 | RACK1C_AT,... | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000169.6 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Cre06.g278222 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g14184 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g07482 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01008395001 | MYB4R1, AtMYB4R1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g49290.1 | RACK1C_AT, LOC_Os01g49290 | associated component RACK1 of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
| MA_10435947g0010 | RACK1B_AT | Guanine nucleotide-binding protein subunit beta-like... | 0.06 | OrthoFinder output from all 47 species | |
| Mp3g15630.1 | RACK1C_AT | associated component RACK1 of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g08733 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06109 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g29110 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g42670 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g19034 | No alias | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Smo266532 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g119040.3.1 | RACK1B_AT, Solyc03g119040 | associated component RACK1 of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g069010.3.1 | RACK1B_AT, Solyc06g069010 | associated component RACK1 of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g01709 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g16013 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g25398 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g25399 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g04974 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g45000 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026456_P001 | RACK1C_AT, Zm00001e026456 | associated component RACK1 of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e032340_P001 | RACK1C_AT, Zm00001e032340 | associated component RACK1 of SSU proteome | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006414 | translational elongation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008483 | transaminase activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043233 | organelle lumen | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| No external refs found! |