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  5. Ala_g10719

Ala_g10719


Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0001675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g10719
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT5G26830 No alias Threonyl-tRNA synthetase 0.04 OrthoFinder output from all 47 species
Azfi_s0123.g048363 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.13G009700.1 Ceric.13G009700 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.23 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cre06.g273300 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
LOC_Os08g19850.1 LOC_Os08g19850 threonine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Lfl_g01963 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
MA_946438g0010 No alias Enzyme classification.EC_6 ligases.EC_6.1 ligase forming... 0.02 OrthoFinder output from all 47 species
Mp1g23020.1 No alias threonine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Msp_g06847 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Pir_g05250 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g53974 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g12652 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Smo130418 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder output from all 47 species
Solyc05g005800.4.1 Solyc05g005800 threonine-tRNA ligase 0.03 OrthoFinder output from all 47 species
Tin_g28822 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Zm00001e004544_P001 Zm00001e004544 threonine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Zm00001e012332_P002 Zm00001e012332 threonine-tRNA ligase 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0043039 tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR004095 TGS 106 164
IPR004154 Anticodon-bd 644 734
IPR002314 aa-tRNA-synt_IIb 421 632
IPR012947 tRNA_SAD 273 322
No external refs found!