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  5. Ala_g00505

Ala_g00505 (SUMO1, SUMO 1, ATSUMO1, SUM1)


Aliases : SUMO1, SUMO 1, ATSUMO1, SUM1

Description : SUMO ubiquitin-fold protein & original description: none


Gene families : OG0001456 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001456_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g00505

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020800.18 No alias Protein degradation.peptide... 0.01 OrthoFinder output from all 47 species
GSVIVT01030502001 SUMO1, SUMO 1,... Protein degradation.peptide... 0.05 OrthoFinder output from all 47 species
Lfl_g29568 SUMO1, SUMO 1,... SUMO ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48661 No alias SUMO ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50165 No alias SUMO ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g01824 SUMO1, SUMO 1,... SUMO ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00215 SUMO1, SUMO 1,... SUMO ubiquiTin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022617 Rad60/SUMO-like_dom 31 100
No external refs found!