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  5. Msp_g39122

Msp_g39122


Description : RsmB-type rRNA methyltransferase & original description: none


Gene families : OG0006886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006886_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g39122
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AT3G13180 No alias NOL1/NOP2/sun family protein / antitermination NusB... 0.04 OrthoFinder output from all 47 species
Aop_g66025 No alias NSUN-group-II rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25046 No alias NSUN-group-IV rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo136794 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc12g015710.2.1 Solyc12g015710 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e010024_P001 Zm00001e010024 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR006027 NusB_RsmB_TIM44 121 218
IPR001678 MeTrfase_RsmB/NOP2 346 540
No external refs found!